frame-alignment-checks
0.0.73

Contents:

  • Models
  • Exons
  • Deletion Experiments
  • Replace 3mer Experiments
  • Real Experiment Results
  • Utilities
frame-alignment-checks
  • Welcome to frame-alignment-checks’s documentation!
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Welcome to frame-alignment-checks’s documentation!

The frame-alignment-checks package provides a set of tools for checking whether splicing prediction models are using frame alignment information.

This documentation assumes that you have imported the package as follows:

import frame_alignment_checks as fac

Contents:

  • Models
    • ModelToAnalyze
    • calibration_accuracy_and_thresholds()
  • Exons
    • CodingExon
    • sequence_to_codons()
    • is_stop()
    • all_frames_closed()
  • Deletion Experiments
    • experiment()
    • experiments()
    • DeletionAccuracyDeltaResult
    • plot_by_deletion_loc_and_affected_site()
    • plot_exon_effects_by_orf()
    • plot_matrix_at_site()
    • Adjacent Deletions Experiment
  • Replace 3mer Experiments
    • Replace3MerResult()
    • experiment()
    • experiments()
    • no_undesired_changes_mask()
    • Plotting
  • Real Experiment Results
    • FullRealExperimentResult
    • RealExperimentResultForModel
    • poison_exon_scores()
    • poison_exon_scores_for_model_series()
    • Plotting
  • Utilities
    • parse_sequence_as_one_hot()
    • bootstrap_series()
    • draw_bases()
    • all_3mers()
    • Plotting utilities
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